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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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97 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
BACH2
ENSSSCG00000004332
ENSG00000112182
BTB domain and CNC homolog 2
Tissue enhanced
Detected in many
lymphoid tissue:
26.2
CCL20
ENSSSCG00000016254
ENSG00000115009
C-C motif chemokine 20 precursor
Tissue enhanced
Detected in all
adrenal gland:
29.1
lymphoid tissue:
26.2
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CD19
ENSSSCG00000007807
ENSG00000177455
B-lymphocyte antigen CD19 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
46.0
CD22
ENSSSCG00000002893
ENSG00000012124
CD22 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
58.5
stomach:
23.7
upper respiratory system:
23.2
CD40
ENSSSCG00000035078
ENSG00000101017
Tumor necrosis factor receptor superfamily member 5
Tissue enhanced
Detected in all
lens:
32.7
lymphoid tissue:
21.3
CD79B
ENSSSCG00000017283
ENSG00000007312
B-cell antigen receptor complex-associated protein beta chain precursor
Tissue enhanced
Detected in some
lymphoid tissue:
49.6
pituitary gland:
14.0
upper respiratory system:
33.2
CD84
ENSSSCG00000006381
ENSG00000066294
CD84 molecule
Tissue enhanced
Detected in all
lymphoid tissue:
37.6
CLEC17A
ENSSSCG00000013777
ENSG00000187912
C-type lectin domain containing 17A
Tissue enriched
Detected in many
lymphoid tissue:
33.0
CNR2
ENSSSCG00000027849
ENSG00000188822
Cannabinoid receptor 2
Tissue enriched
Detected in some
lymphoid tissue:
39.5
CR2
ENSSSCG00000028674
ENSG00000117322
Complement C3d receptor 2
Group enriched
Detected in some
lymphoid tissue:
90.2
small intestine:
27.8
synovial tissue:
93.4
upper respiratory system:
29.5
CTLA4
ENSSSCG00000016122
ENSG00000163599
Cytotoxic T-lymphocyte protein 4 precursor
Tissue enhanced
Detected in some
large intestine:
8.5
lymphoid tissue:
20.8
stomach:
6.7
CXCR5
ENSSSCG00000015098
ENSG00000160683
C-X-C motif chemokine receptor 5
Tissue enhanced
Detected in many
lymphoid tissue:
36.0
DFFB
ENSSSCG00000021436
ENSG00000169598
DNA fragmentation factor subunit beta
Low tissue specificity
Detected in all
DPPA5
ENSSSCG00000004283
ENSG00000203909
Developmental pluripotency-associated 5 protein
Tissue enhanced
Detected in some
lymphoid tissue:
8.9
ovary:
11.2
ELL3
ENSSSCG00000004699
ENSG00000128886
Elongation factor for RNA polymerase II 3
Tissue enhanced
Detected in many
lymphoid tissue:
52.8
upper respiratory system:
22.4
ERFE
ENSSSCG00000016337
ENSG00000178752
Erythroferrone
Tissue enhanced
Detected in many
lymphoid tissue:
12.5
FCER2
ENSSSCG00000040377
ENSG00000104921
Low affinity immunoglobulin epsilon Fc receptor
Tissue enriched
Detected in some
lymphoid tissue:
47.0
FCRL1
ENSSSCG00000006456
ENSG00000163534
Fc receptor like 1
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
FCRL3
ENSSSCG00000006457
ENSG00000160856
Fc receptor like 3
Tissue enriched
Detected in many
lymphoid tissue:
38.2
FCRL4
ENSSSCG00000006458
ENSG00000163518
Fc receptor like 4
Tissue enriched
Detected in some
lymphoid tissue:
36.9
FCRLA
ENSSSCG00000030246
ENSG00000132185
Fc receptor like A
Tissue enhanced
Detected in some
lymphoid tissue:
34.8
small intestine:
12.0
upper respiratory system:
19.8
FCRLB
ENSSSCG00000006348
ENSG00000162746
Fc receptor like B
Tissue enhanced
Detected in some
lymphoid tissue:
6.3
FGF3
ENSSSCG00000012872
ENSG00000186895
Fibroblast growth factor 3
Tissue enhanced
Detected in some
lymphoid tissue:
4.0
small intestine:
1.7
upper respiratory system:
3.2
FOXP3
ENSSSCG00000012300
ENSG00000049768
Forkhead box protein P3
Tissue enriched
Detected in many
lymphoid tissue:
23.0
FUT7
ENSSSCG00000037554
ENSG00000180549
Fucosyltransferase 7
Tissue enriched
Detected in some
lymphoid tissue:
18.8
GCSAM
ENSSSCG00000021511
ENSG00000174500
Germinal center-associated signaling and motility protein
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
upper respiratory system:
29.3
HMCES
ENSSSCG00000011611
ENSG00000183624
5-hydroxymethylcytosine binding, ES cell specific
Tissue enhanced
Detected in all
lymphoid tissue:
62.7
IL12B
ENSSSCG00000017044
ENSG00000113302
Interleukin-12 subunit beta
Tissue enhanced
Detected in some
cornea:
7.8
lymphoid tissue:
5.0
IL21
ENSSSCG00000009087
ENSG00000138684
Interleukin-21 precursor
Tissue enhanced
Detected in some
liver:
18.7
lymphoid tissue:
12.5
IL21R
ENSSSCG00000007816
ENSG00000103522
Interleukin 21 receptor
Tissue enhanced
Detected in many
lymphoid tissue:
30.9
IL22RA2
ENSSSCG00000004158
ENSG00000164485
Interleukin 22 receptor subunit alpha 2
Tissue enriched
Detected in some
lymphoid tissue:
18.1
JAK3
ENSSSCG00000013888
ENSG00000105639
Janus kinase 3
Tissue enhanced
Detected in many
lymphoid tissue:
34.3
KLHL6
ENSSSCG00000031476
ENSG00000172578
Kelch like family member 6
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
LAG3
ENSSSCG00000000688
ENSG00000089692
Lymphocyte activation gene 3 protein precursor
Tissue enhanced
Detected in many
cartilage:
22.4
lymphoid tissue:
18.4
LTA
ENSSSCG00000001403
ENSG00000226979
Lymphotoxin-alpha
Tissue enhanced
Detected in many
lymphoid tissue:
29.5
upper respiratory system:
8.7
LTB
ENSSSCG00000001405
ENSG00000227507
Lymphotoxin-beta
Tissue enriched
Detected in many
lymphoid tissue:
56.3
MMP12
ENSSSCG00000014987
ENSG00000262406
Macrophage metalloelastase precursor
Tissue enriched
Detected in some
lymphoid tissue:
35.0
MMP20
ENSSSCG00000014983
ENSG00000137674
Matrix metalloproteinase-20
Tissue enhanced
Detected in some
gallbladder:
4.2
lens:
4.2
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
na
ENSSSCG00000000622
Tissue enhanced
Detected in some
lymphoid tissue:
10.0
testis:
4.3
na
ENSSSCG00000001407
ENSG00000204475
Group enriched
Detected in some
kidney:
10.3
lymphoid tissue:
38.4
na
ENSSSCG00000005209
Tissue enhanced
Detected in some
lung:
3.7
lymphoid tissue:
5.0
na
ENSSSCG00000006188
ENSG00000230667
Tissue enhanced
Detected in some
esophagus:
2.2
lung:
1.3
lymphoid tissue:
2.5
small intestine:
1.4
upper respiratory system:
1.8
na
ENSSSCG00000006376
Tissue enhanced
Detected in many
large intestine:
8.8
lymphoid tissue:
18.7
na
ENSSSCG00000007596
ENSG00000122543,ENSG00000135175
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
upper respiratory system:
10.8
na
ENSSSCG00000007695
ENSG00000267368,ENSG00000284981
Group enriched
Detected in many
endometrium:
18.3
lymphoid tissue:
14.7
na
ENSSSCG00000014672
ENSG00000258659
Tissue enhanced
Detected in many
lymphoid tissue:
64.7
upper respiratory system:
33.2
na
ENSSSCG00000015294
ENSG00000203710
Tissue enriched
Detected in some
lymphoid tissue:
65.5
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